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EEG Analysis Code Organization for Researchers
When working with EEG data, maintaining well-structured code files can significantly improve research efficiency and reproducibility. Here's how organizing analysis scripts into different files benefits researchers:
Preprocessing Modules Separate files for filtering, artifact removal, and normalization allow researchers to easily swap pipelines or compare preprocessing methods. This modularity prevents monolithic scripts and simplifies debugging.
Feature Extraction Handlers Dedicated files for time-domain, frequency-domain, and time-frequency analyses enable clean implementation of different feature calculation methods. Researchers can mix-and-match techniques without modifying core analysis logic.
Visualization Utilities Isolating plotting functions makes it easier to maintain consistent formatting across publications and adapt visualizations for different presentation needs (e.g., conferences vs. journal articles).
Experiment-Specific Configurations Storing paradigm details, event markers, and channel configurations in separate files allows the same analysis backbone to be reused across multiple studies while maintaining study-specific parameters.
This structure particularly helps collaborative teams by: Reducing merge conflicts in version control Enabling parallel development of different analysis components Creating natural documentation through file organization
For longitudinal studies, this approach also simplifies adapting analyses as new preprocessing techniques or feature extraction methods emerge in the field. The key is balancing modularity with reasonable file counts to avoid fragmentation.